Laboratory for Computational Imaging and Bioinformatics (LCIB)

At the Laboratory fo r Computational Imaging and Informatics at Rutgers University, we are involved in the development of novel machine learning, image analysis, computer vision, signal processing, segmentation, and multi-modal registration tools to facilitate efficient synergistic analysis and correlation of disease signatures across multiple scales, modalities, and functionalities -- from gene and protein expression to spectroscopy to histopathology and to MRI with an emphasis on prostate and more recently breast cancer. Our systems approach for quantitatively analyzing multi-functional, multi-scale, multi-modal data in an integrated fashion will be extremely important in diagnostic, theragnostic, and prognostic settings.

Click on a Picture to View Related Work








Histology


Prostate Diagnostics


in vivo MR to histology overlay

Breast MRI Image Registration
Bioinformatics







Prostate MRS





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February 2010 PDF Print E-mail

February 7, 2010
LCIB cited as one of the major players in image integration and fusion by Washington G2 report
G2 Washington reports, an independent news and information service company specializing in topical and analytical newsletters, in a technical report on Integrated Diagnostics, names the Laboratory for Computational Imaging and Bioinformatics (LCIB) in the Dept. of Biomedical Engineering, Rutgers University, as one of the major players in image integration and fusion. (Link)


LCIB work on prostate cancer detection featured in Rutgers magazine
Ongoing work on prostate cancer diagnostics using multi-modal MRI was recently featured in the Spring 2010 edition of the Rutgers magazine. This project is currently funded via grants from the NIH and the Wallace H. Coulter Foundation. Professor Anant Madabhushi is the Rutgers PI on this project. (Link)

Last Updated on Sunday, 07 February 2010 21:32
 
December 2009 PDF Print E-mail

Dec 31, 2009
LCIB paper accepted in IEEE TBME
Kudos to Hussain, Jun, and Ajay whose paper "Expectation Maximization driven Geodesic Active Contour with Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer Histopathology" has been accepted for publication in IEEE Trans. on Biomedical Engineering.


Dec 8, 2009
LCIB-UPENN-Bioimagene story on CNBC

Link: http://www.cnbc.com/id/34311051


Dec 7, 2009
LCIB (Rutgers), UPENN, Bioimagene sign 3 year sponsored research agreement to develop prostate cancer diagnosis algorithms
The Laboratory for Computational Imaging and Bioinformatics (LCIB) at Rutgers, Hospital at University of Pennsylvania, and the Digital Pathology company, Bioimagene, have just signed a 3 year sponsored research and licensing agreement to develop digital pathology image analysis algorithms for detection and grading of prostate cancer. Under this 3 year research agreement, Bioimagene will support Rutgers (PI: Anant Madabhushi) and UPENN (PI's: Michael Feldman, John Tomaszewski) with a $300,000 grant. Further, Bioimagene will sponsor a visiting scientist at LCIB and pathology fellow at UPENN, in addition to providing a commercial whole slide digital scanner and computational servers to the two academic institutions. Under this agreement, Bioimagene will license digital pathology algorithms developed at Rutgers and UPENN (Inventors: Anant Madabhushi, Scott Doyle, John Tomaszewski, Michael Feldman) for use in their commercial whole slide digital pathology scanners.

Last Updated on Monday, 01 February 2010 15:38
 
January 2010 PDF Print E-mail

January 27, 2010
LCIB poster accepted at ISMRM

Kudos to Shannon, whose abstract "Distinguishing Molecular Subtypes of Breast Cancer Based on Computer-aided Diagnosis of DCE-MRI" has been accepted for presentation at Intl. Society for Magnetic Resonance in Medicine (ISMRM) to be held in Stockholm, Sweden in May this year.


Further press coverage of Rutgers-UPENN-Bioimagene announcement
CAP Today Editor Sherrie Rice included a brief on the Rutgers/UPenn announcement as a Newsbyte in the January edition of the publication.


BME, LCIB Student Pallavi Tiwari's work showcased by Indian media
Pallavi Tiwari, 2nd year PhD student in BME, LCIB was recently featured on the Indian news media. Pallavi's invited talk on "Computer aided diagnosis for prostate cancer detection" at science and technologies conference, Bhartiyan Vigyan Sammelan, Indore India in Dec. 2010 was covered by an Indian news TV channel. Pallavi is doing her PhD under the mentorship of Professor Anant Madabhushi. (Link)


January 19, 2010
LCIB students are chosen as a finalist for BMEIdea Competition

Ajay Basavanhally and Scott Doyle have been short listed for the finals of national level competition, on their project "Image based predictor of outcome for ER+ breast cancers" at BMEIdea Design competition (http://www.nciia.org/bmeidea/). They will now compete with 9 other finalists in this unique competition that judges rank entries on all aspects of biomedical commercialization, from product innovation to market need, and from regulatory strategies to social impact. Ajay and Scott were awarded $500 for making it to the finals of this competition. This project is supervised by Dr. Anant Madabhushi and Dr. Shridar Ganesan. Incidentally, this is the 3rd time in 4 years that LCIB students have been shortlisted for this prestigious competition.


January 16, 2010
LCIB registers 5 papers at ISBI 2010
Kudos to all LCIB authors (Scott, Ajay, James, Jon, Rachel, Rob, Gaoyu, Shannon, George) who have cumulatively registered 5 papers at IEEE Intl. Symposium on Biomedical Imaging, 2010, to be held in April in Rotterdam, Netherlands.

Last Updated on Sunday, 07 February 2010 21:32
 
November 2009 PDF Print E-mail

Nov 23, 2009
LCIB-UPENN-Siemens grant featured on ScienceWorksForUs

LCIB's success in garnering a NIH R01 (jointly with Siemens and Penn) has been featured on ScienceWorksForUS website:


ScienceWorksForUS is a joint effort of the Association of American Universities (AAU), the Association of Public and Land-grant Universities (APLU), and The Science Coalition (TSC) to demonstrate the impact of stimulus-funded university research activities across the country.


Nov 13, 2009
Pallavi Tiwari awarded DoD pre-doctoral fellowship
Pallavi Tiwari (LCIB member and 2nd year BME PhD student) has been awarded a 3 year, $100K, Department of Defense fellowship for her project entitled "Computerized Decision Support System for Detection and Grading of Prostate Cancer Using Magnetic Resonance Spectroscopy (MRS)". Pallavi will be working under the mentorship of Dr. Anant Madabhushi. Dr's Mark Rosen (UPENN), John Kurhanewicz (UCSF), and Nicholas Bloch (Boston Medical Center) will serve as clinical collaborators on this project.


Nov 10, 2009
Ajay Basavanhally awarded 2 year NJCCR fellowship
Kudos to LCIB member, Ajay Basavanhally who has been awarded a 2 year predoctoral fellowship from the New Jersey Commission on Cancer research for his project entitled “Quantitative Prognosis on Breast Cancer Histopathology”. The 2 year, $50,000 fellowship will support Ajay during his PhD program in the BME dept. at Rutgers.

Last Updated on Thursday, 17 December 2009 13:59
 
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